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Jinbo Xu is the recipient of an award funded by the National Institute of General Medical Sciences (NIGMS), in collaborative research with Dr. Tobin Sosnick (University of Chicago). The award is for just under $200,000 and covers three years. The grant is titled "Protein Structure Refinement using a Novel Moveset".


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Programming Experience Requirement

Ph.D. students must have or acquire experience in computer programming with a general purpose programming language. Before their candidacy exam students must demonstrate that they have designed and implemented some substantial software system, either from scratch or as a significant extension to existing software.

The student must be responsible for the design of the software or the extension. The software does not have to be "industrial strength", i.e., it does not have to be polished to the point where it is ready to be released to a user community. A simple demonstration of some algorithm or idea is sufficient. However, the problem should be large enough that significant systems engineering issues are addressed. Some examples are given below.

This requirement can be satisfied through a summer programming job, programming experience as an undergraduate, or by independently writing software, provided that the above criteria are satisfied.

TTI-C has appointed a member of the faculty as "Programming Experience Czar". Students should consult with this faculty member to make sure that whatever project they embark on or have embarked on is substantial enough to provide actual "programming experience".

By the time of their candidacy exam, students must have submitted their code together with a paper (10-15 pages in, e.g., standard LaTeX 10pt, single-column article style) explaining the problem, known approaches to solving it, and the actual approach taken. The write up must also contain a discussion of key aspects of the actual code and technical difficulties that were encountered together with their solutions. If the project consists of an evaluation of an algorithm or an implementation technique, then the paper should report quantitative results. Finally, students must give a presentation on their project before faculty and other students.

Examples: